Researcher in Statistical Genetics

INRAE, GenPhySE Lab

Biography

I am a researcher in statistical genetics at the GenPhySE INRAE Lab. My research interests include population genetics, quantitative genetics and genomics. My group develops new methods for the analysis of large scale genetic data with a particular interest in understanding the evolution of livestock species.

Interests
  • Statistics
  • Genetics
  • Evolution
  • Python programming language
Education

  • PhD in Genetics, 2003

    Université Paris-Sud

  • MSc in Agronomy and Plant Breeding, 2000

    AgroParisTech

Experience

 
 
 
 
 
Senior Researcher
INRAE, Animal Genetics
Jan 2021 – Present Toulouse, France

Leader of the Dynagen Research group

  • Modelling
  • Analysis of large scale genetic data
  • Software development
 
 
 
 
 
Research Associate
INRA, Animal Genetics
Sep 2006 – Dec 2020 Toulouse, France
 
 
 
 
 
Post-doctoral Fellow
University of Washington, Department of Statistics, Matthew Stephens Lab
Feb 2004 – Aug 2006 Seattle, WA, USA
Developped statistical methods for genome-wide association studies based on genotype imputation

Projects

Evolution of recombination
What are the genetic determinisms of recombination ? How does it evolve ?
Evolution of recombination
Genetics of honeybee populations
Understand the genetic structure and diversity of honeybee populations
Population Genomics
Using genomic data to understand the evolutionary history of populations

Preprints

Discovering Genomic Regions Associated with the Phenotypic Differentiation of European Local Pig Breeds
Background Intensive selection of modern pig breeds resulted in genetic improvement of productive traits while local pig breeds …
Klavdija Poklukar, Camille Mestre, Martin Škrlep, Marjeta Čandek-Potokar, Cristina Ovilo, Luca Fontanesi, Juliette Riquet, Samuele Bovo, Giuseppina Schiavo, Anisa Ribani, Maria Muñoz, Maurizio Gallo, Ricardo Bozzi, Rui Charneca, Raquel Quintanilla, Goran Kušec, Marie J. Mercat, Christoph Zimmer, Violeta Razmaite, Jose P. Araujo, Čedomir Radović, Radomir Savić, Danijel Karolyi, Bertrand Servin
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Recent Publications

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M. Guichard, B. Dainat, S. Eynard, A. Vignal, B. Servin, M. Neuditschko (2022). Identification of Quantitative Trait Loci Associated with Calmness and Gentleness in Honey Bees Using Whole-Genome Sequences.

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David Wragg, Sonia E. Eynard, Benjamin Basso, Kamila Canale-Tabet, Emmanuelle Labarthe, Olivier Bouchez, Kaspar Bienefeld, Małgorzata Bieńkowska, Cecilia Costa, Aleš Gregorc, Per Kryger, Melanie Parejo, M. Alice Pinto, Jean-Pierre Bidanel, Bertrand Servin, Yves Le Conte, Alain Vignal (2022). Complex Population Structure and Haplotype Patterns in the Western European Honey Bee from Sequencing a Large Panel of Haploid Drones.

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Klavdija Poklukar, Camille Mestre, Martin Škrlep, Marjeta Čandek-Potokar, Cristina Ovilo, Luca Fontanesi, Juliette Riquet, Samuele Bovo, Giuseppina Schiavo, Anisa Ribani, Maria Muñoz, Maurizio Gallo, Ricardo Bozzi, Rui Charneca, Raquel Quintanilla, Goran Kušec, Marie J. Mercat, Christoph Zimmer, Violeta Razmaite, Jose P. Araujo, Čedomir Radović, Radomir Savić, Danijel Karolyi, Bertrand Servin (2022). Discovering Genomic Regions Associated with the Phenotypic Differentiation of European Local Pig Breeds. Cold Spring Harbor Laboratory.

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Nicolas Mary, Nathalie Iannuccelli, Geoffrey Petit, Nathalie Bonnet, Alain Pinton, Harmonie Barasc, Amélie Faure, Anne Calgaro, Vladimir Grosbois, Bertrand Servin, Alain Ducos, Juliette Riquet (2022). Genome-Wide Analysis of Hybridization in Wild Boar Populations Reveals Adaptive Introgression from Domestic Pig.

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Abdessamad Ouhrouch, Simon Boitard, Frédéric Boyer, Bertrand Servin, Anne Da Silva, François Pompanon, Abdelmajid Haddioui, Badr Benjelloun (2021). Genomic Uniqueness of Local Sheep Breeds From Morocco.

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Popular Topics

Abscam alleles animals Apis mellifera breeding chromosome mapping female genetic genome genotype haplotypes male polymorphism population genetics selection sequence analysis sheep single nucleotide Sus scrofa transcriptome

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