Publications

(2024). Sequence-based genome-wide association studies reveal the polygenic architecture of Varroa destructor resistance in Western honey bees Apis mellifera. bioRxiv.

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(2023). A Meta-Analysis of Genetic and Phenotypic Diversity of European Local Pig Breeds Reveals Genomic Regions Associated with Breed Differentiation for Production Traits.

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(2023). Genetic Diversity and Historical Demography of Underutilised Goat Breeds in North-Western Europe. Nature Publishing Group.

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(2023). Comparison of Genomic-Enabled Cross Selection Criteria for the Improvement of Inbred Line Breeding Populations.

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(2023). The Black Honey Bee Genome: Insights on Specific Structural Elements and a First Step towards Pan-Genomes. Cold Spring Harbor Laboratory.

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(2022). Reconstructing Queen Genotypes by Pool Sequencing Colonies in Eusocial Insects: Statistical Methods and Their Application to Honeybee.

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(2022). Complex Population Structure and Haplotype Patterns in the Western European Honey Bee from Sequencing a Large Panel of Haploid Drones.

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(2022). Genome-Wide Analysis of Hybridization in Wild Boar Populations Reveals Adaptive Introgression from Domestic Pig.

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(2021). Genomic Uniqueness of Local Sheep Breeds From Morocco.

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(2021). Local Adaptations of Mediterranean Sheep and Goats through an Integrative Approach. Nature Publishing Group.

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(2021). Evolution of Recombination Landscapes in Diverging Populations of Bread Wheat.

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(2021). Gene Banks as Reservoirs to Detect Recent Selection: The Example of the Asturiana de Los Valles Bovine Breed.

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(2020). Evaluation of Suppressed Mite Reproduction (SMR) Reveals Potential for Varroa Resistance in European Honey Bees (Apis Mellifera L.). Multidisciplinary Digital Publishing Institute.

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(2020). Descriptive Analysis of the Varroa Non-reproduction Trait in Honey Bee Colonies and Association with Other Traits Related to Varroa Resistance. Preprints.

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(2019). Inference of Selection from Genetic Time Series Using Various Parametric Approximations to the Wright-Fisher Model. G3: Genes, Genomes, Genetics.

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(2018). Signatures of selection and environmental adaptation across the goat genome post-domestication.. Genet Sel Evol.

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(2018). Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes.. Genet Sel Evol.

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(2018). Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.. Nat Genet.

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(2018). Convergent genomic signatures of domestication in sheep and goats.. Nat Commun.

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(2018). Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep. BMC Genomics.

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(2017). Variation in Recombination Rate and Its Genetic Determinism in Sheep Populations.. Genetics.

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(2017). Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep.. Mol Biol Evol.

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(2017). Development of a SNP panel dedicated to parentage assignment in French sheep populations.. BMC Genet.

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(2017). High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism. Genetics.

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(2016). Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds.. Genetics.

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(2015). Genome Scan for Selection in Structured Layer Chicken Populations Exploiting Linkage Disequilibrium Information. PLoS One.

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(2015). Large-scale investigation of the parameters in response to challenge in broilers.. J Anim Sci.

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(2015). Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation.. G3 (Bethesda).

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(2015). Genome-wide association study and biological pathway analysis of the Eimeria maxima response in broilers.. Genet Sel Evol.

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(2014). Evolutionary origin of bone morphogenetic protein 15 and growth and differentiation factor 9 and differential selective pressure between mono- and polyovulating species.. Biol Reprod.

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(2014). Selection Signatures in Worldwide Sheep Populations. PLoS One.

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(2014). The sheep genome illuminates biology of the rumen and lipid metabolism.. Science.

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(2014). Transcriptome-wide investigation of genomic imprinting in chicken.. Nucleic Acids Res.

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(2014). An update of the goat genome assembly using dense radiation hybrid maps allows detailed analysis of evolutionary rearrangements in Bovidae.. BMC Genomics.

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(2014). A genome-wide association study of production traits in a commercial population of Large White pigs: evidence of haplotypes affecting meat quality.. Genetics, selection, evolution : GSE.

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(2013). A Genome-Wide Association Study Points out the Causal Implication of SOX9 in the Sex-Reversal Phenotype in XX Pigs. PLoS One.

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(2013). Detecting signatures of selection through haplotype differentiation among hierarchically structured population. Genetics.

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(2013). Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus). Nature Biotechnology.

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(2013). Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus. Plos One.

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(2012). Genome-Wide Analysis of the Worlds Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection. PLoS Biol.

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(2012). High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly.. BMC Genomics.

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(2012). Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail.. BMC Genomics.

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(2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature.

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(2012). A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content. BMC Genomics.

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(2011). A locally congenic backcross design in pig: a new regional fine QTL mapping approach miming congenic strains used in mouse.. BMC Genet.

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(2010). Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended. Genetics.

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(2010). Statistical confidence measures for genome maps: application to the validation of genome assemblies. Bioinformatics.

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(2010). Genetic variability and linkage disequilibrium patterns in the bovine DNAJA1 gene.. Molecular biotechnology.

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(2009). Contribution of radiation hybrids to genome mapping in domestic animals.. Cytogenet Genome Res.

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(2008). Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia.. Genome research.

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(2004). Marker-assisted introgression of five QTLs controlling fruit quality traits into three tomato lines revealed interactions between QTLs and genetic backgrounds. Theoretical and Applied Genetics.

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(2004). Marker-assisted introgression of 4 Phytophthora capsici resistance QTL alleles into a bell pepper line: validation of additive and epistatic effects. Molecular Breeding.

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(2004). IBD-based QTL detection in inbred pedigrees: A case study of cereal breeding programs. Euphytica.

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(2004). Toward a theory of marker-assisted gene pyramiding.. Genetics.

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(2002). MDM: A Program to Compute Fully Informative Genotype Frequencies in Complex Breeding Schemes. Journal of Heredity.

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